1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G68890

AT1G68890


Description : magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases


Gene families : OG0003044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003044_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G68890
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00258450 evm_27.TU.AmTr_v1... Coenzyme metabolism.phylloquinone... 0.07 OrthoFinder output from all 47 species
Adi_g117118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61261.t1 Aspi01Gene61261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0232.g059302 No alias multifunctional protein *(PHYLLO) involved in... 0.06 OrthoFinder output from all 47 species
Cba_g17578 No alias EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z241600.1 Ceric.1Z241600 multifunctional protein *(PHYLLO) involved in... 0.09 OrthoFinder output from all 47 species
Ceric.1Z284900.1 Ceric.1Z284900 multifunctional protein *(PHYLLO) involved in... 0.05 OrthoFinder output from all 47 species
Ceric.21G066100.1 ICS2, ATICS2,... EC_5.4 intramolecular transferase & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01010139001 No alias Coenzyme metabolism.phylloquinone... 0.04 OrthoFinder output from all 47 species
GSVIVT01010141001 No alias Coenzyme metabolism.phylloquinone... 0.03 OrthoFinder output from all 47 species
LOC_Os02g37090.1 LOC_Os02g37090 Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g30736 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18942 No alias EC_5.4 intramolecular transferase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g29600 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43618 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16306 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004536 No alias EC_5.4 intramolecular transferase & original... 0.03 OrthoFinder output from all 47 species
Sam_g24515 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Smo121384 ICS2, ATICS2 Phytohormones.salicylic acid.synthesis.isochorismate synthase 0.07 OrthoFinder output from all 47 species
Solyc06g071030.3.1 ICS2, ATICS2,... isochorismate synthase. isochorismate synthase 0.03 OrthoFinder output from all 47 species
Spa_g47580 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033927_P002 ICS2, ATICS2,... isochorismate synthase. isochorismate synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0042372 phylloquinone biosynthetic process IMP Interproscan
BP GO:0042550 photosystem I stabilization IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019252 starch biosynthetic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR011766 TPP_enzyme_TPP-bd 819 933
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 366 529
IPR032264 MenD_middle 545 777
IPR029065 Enolase_C-like 1158 1326
IPR000073 AB_hydrolase_1 1435 1540
No external refs found!