Description : CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).
Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g085780 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g117174 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g13851 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g27769 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g02622 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g34090 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene45116.t1 | Aspi01Gene45116 | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026918 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g38242 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G072900.1 | Ceric.13G072900 | component *(SPT20/ADA5) of SAGA transcription... | 0.14 | OrthoFinder output from all 47 species | |
| Dac_g38696 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06485 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01016716001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os10g25200.1 | LOC_Os10g25200 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.08 | OrthoFinder output from all 47 species | |
| Lfl_g13242 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10436298g0010 | No alias | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.04 | OrthoFinder output from all 47 species | |
| MA_114383g0010 | No alias | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.02 | OrthoFinder output from all 47 species | |
| MA_911375g0010 | No alias | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.05 | OrthoFinder output from all 47 species | |
| Mp2g19910.1 | No alias | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g32360 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g37205 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g15131 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g07983 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc06g063010.4.1 | Solyc06g063010 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g49888 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e024750_P001 | Zm00001e024750 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
| BP | GO:0000910 | cytokinesis | IEP | HCCA |
| BP | GO:0000911 | cytokinesis by cell plate formation | IEP | HCCA |
| CC | GO:0005635 | nuclear envelope | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006346 | DNA methylation-dependent heterochromatin formation | IEP | HCCA |
| BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
| BP | GO:0006406 | mRNA export from nucleus | IEP | HCCA |
| BP | GO:0006486 | protein glycosylation | IEP | HCCA |
| BP | GO:0006497 | protein lipidation | IEP | HCCA |
| BP | GO:0006498 | N-terminal protein lipidation | IEP | HCCA |
| BP | GO:0006499 | N-terminal protein myristoylation | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0006997 | nucleus organization | IEP | HCCA |
| BP | GO:0007062 | sister chromatid cohesion | IEP | HCCA |
| BP | GO:0007267 | cell-cell signaling | IEP | HCCA |
| BP | GO:0007389 | pattern specification process | IEP | HCCA |
| BP | GO:0009606 | tropism | IEP | HCCA |
| BP | GO:0009615 | response to virus | IEP | HCCA |
| BP | GO:0009616 | RNAi-mediated antiviral immune response | IEP | HCCA |
| BP | GO:0009629 | response to gravity | IEP | HCCA |
| BP | GO:0009630 | gravitropism | IEP | HCCA |
| BP | GO:0009640 | photomorphogenesis | IEP | HCCA |
| BP | GO:0009756 | carbohydrate mediated signaling | IEP | HCCA |
| BP | GO:0009791 | post-embryonic development | IEP | HCCA |
| BP | GO:0009799 | specification of symmetry | IEP | HCCA |
| BP | GO:0009845 | seed germination | IEP | HCCA |
| BP | GO:0009855 | determination of bilateral symmetry | IEP | HCCA |
| BP | GO:0009880 | embryonic pattern specification | IEP | HCCA |
| BP | GO:0009908 | flower development | IEP | HCCA |
| BP | GO:0009933 | meristem structural organization | IEP | HCCA |
| BP | GO:0010014 | meristem initiation | IEP | HCCA |
| BP | GO:0010050 | vegetative phase change | IEP | HCCA |
| BP | GO:0010072 | primary shoot apical meristem specification | IEP | HCCA |
| BP | GO:0010073 | meristem maintenance | IEP | HCCA |
| BP | GO:0010154 | fruit development | IEP | HCCA |
| BP | GO:0010162 | seed dormancy process | IEP | HCCA |
| BP | GO:0010182 | sugar mediated signaling pathway | IEP | HCCA |
| BP | GO:0010267 | ta-siRNA processing | IEP | HCCA |
| BP | GO:0010431 | seed maturation | IEP | HCCA |
| BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
| BP | GO:0010608 | post-transcriptional regulation of gene expression | IEP | HCCA |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0016441 | post-transcriptional gene silencing | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | HCCA |
| BP | GO:0018377 | protein myristoylation | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0019915 | lipid storage | IEP | HCCA |
| BP | GO:0021700 | developmental maturation | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0022611 | dormancy process | IEP | HCCA |
| BP | GO:0023052 | signaling | IEP | HCCA |
| BP | GO:0030422 | siRNA processing | IEP | HCCA |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | HCCA |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | HCCA |
| BP | GO:0031507 | heterochromatin formation | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0034399 | nuclear periphery | IEP | HCCA |
| BP | GO:0035194 | RNA-mediated post-transcriptional gene silencing | IEP | HCCA |
| BP | GO:0035196 | miRNA processing | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0040029 | epigenetic regulation of gene expression | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0045087 | innate immune response | IEP | HCCA |
| BP | GO:0045595 | regulation of cell differentiation | IEP | HCCA |
| BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | HCCA |
| BP | GO:0048366 | leaf development | IEP | HCCA |
| BP | GO:0048367 | shoot system development | IEP | HCCA |
| BP | GO:0048532 | anatomical structure arrangement | IEP | HCCA |
| BP | GO:0048608 | reproductive structure development | IEP | HCCA |
| BP | GO:0048609 | multicellular organismal reproductive process | IEP | HCCA |
| BP | GO:0048731 | system development | IEP | HCCA |
| BP | GO:0048825 | cotyledon development | IEP | HCCA |
| BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
| BP | GO:0050658 | RNA transport | IEP | HCCA |
| BP | GO:0050826 | response to freezing | IEP | HCCA |
| BP | GO:0051028 | mRNA transport | IEP | HCCA |
| BP | GO:0051168 | nuclear export | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051235 | maintenance of location | IEP | HCCA |
| BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0051301 | cell division | IEP | HCCA |
| BP | GO:0051607 | defense response to virus | IEP | HCCA |
| BP | GO:0070085 | glycosylation | IEP | HCCA |
| BP | GO:0070828 | heterochromatin organization | IEP | HCCA |
| BP | GO:0070918 | regulatory ncRNA processing | IEP | HCCA |
| BP | GO:0071695 | anatomical structure maturation | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| CC | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | IEP | HCCA |
| BP | GO:0090421 | embryonic meristem initiation | IEP | HCCA |
| BP | GO:0090567 | reproductive shoot system development | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:0140546 | defense response to symbiont | IEP | HCCA |
| BP | GO:0140718 | facultative heterochromatin formation | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
