AT1G73830 (BEE3)

Aliases : BEE3

Description : BR enhanced expression 3

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G73830
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AT3G07340	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g012121	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03333	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aev_g17229	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aev_g17417	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aev_g17433	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aop_g56154	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene54623.t1	LRL3, Aspi01Gene54623	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g25222	LRL3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.08G020500.1	RSL2, Ceric.08G020500	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.26G029500.1	Ceric.26G029500	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Ceric.32G068300.1	Ceric.32G068300	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g23770	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dcu_g51679	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01018165001	UNE10	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01020814001	SRL2, PIF4, AtPIF4	External stimuli response.light.red/far red light.PIF...	0.03	OrthoFinder output from all 47 species
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
LOC_Os01g02110.1	RHD6, LOC_Os01g02110	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os03g42100.1	RSL2, LOC_Os03g42100	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g01700.1	HEC3, LOC_Os08g01700	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os11g25560.1	LOC_Os11g25560	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
MA_10344244g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_10435000g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_42080g0010	CIB1	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
MA_9115341g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Mp3g23300.1	HEC3	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Mpzg01410.1	LRL3	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Nbi_g16755	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42592	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g38111	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Pnu_g33726	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c17_17000V3.1	LRL1, Pp3c17_17000	LJRHL1-like 1	0.02	OrthoFinder output from all 47 species
Ppi_g33350	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62088	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026567	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Smo402301	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
Smo409967	ATRSL1, RSL1	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Solyc01g109700.3.1	CIB1, Solyc01g109700	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Solyc02g062690.3.1	BEE2, Solyc02g062690	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Solyc02g091440.2.1	RHD6, Solyc02g091440	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc03g034000.3.1	BEE2, Solyc03g034000	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc03g044460.1.1	HEC2, Solyc03g044460	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc03g115540.2.1	UNE10, Solyc03g115540	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc03g119390.4.1	BEE3, Solyc03g119390	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Solyc04g077960.1.1	RSL2, Solyc04g077960	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc05g006650.3.1	Solyc05g006650	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Solyc07g043580.4.1	PIL6, PIF5,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Solyc11g005780.3.1	HEC3, Solyc11g005780	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc12g010170.2.1	LRL1, Solyc12g010170	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc12g088380.1.1	RSL2, Solyc12g088380	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc12g098620.2.1	Solyc12g098620	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Spa_g47496	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003701_P003	Zm00001e003701	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e015610_P001	RHD6, Zm00001e015610	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e022005_P003	Zm00001e022005	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e034605_P003	Zm00001e034605	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IMP	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0008146	sulfotransferase activity	IEP	HCCA
BP	GO:0009638	phototropism	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0031210	phosphatidylcholine binding	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
MF	GO:0120227	acyl-CoA binding	IEP	HCCA
MF	GO:1901567	fatty acid derivative binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
BP	GO:1902446	regulation of shade avoidance	IEP	HCCA
BP	GO:1902448	positive regulation of shade avoidance	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	157	204

External Links

No external refs found!

AT1G73830 (BEE3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation