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  5. AT1G74600

AT1G74600


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G74600
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00097640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g003303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005549 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005739 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034178 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060846 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074694 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085794 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16335 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17028 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g35754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33642 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g60598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08600.t1 Aspi01Gene08600 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14586.t2 Aspi01Gene14586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36735.t1 Aspi01Gene36735 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000167 No alias not classified & original description: CDS=1-1701 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023827 No alias not classified & original description: CDS=1-3255 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025537 No alias ssDNA-binding protein *(OSB) & original description: CDS=167-2242 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.01 OrthoFinder output from all 47 species
Azfi_s0277.g061496 No alias not classified & original description: CDS=1-2121 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066473 No alias not classified & original description: CDS=1-1980 0.02 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.01 OrthoFinder output from all 47 species
Cba_g05935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G031300.1 Ceric.01G031300 not classified & original description: pacid=50591599... 0.01 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.02 OrthoFinder output from all 47 species
Ceric.07G042200.1 Ceric.07G042200 not classified & original description: pacid=50626031... 0.01 OrthoFinder output from all 47 species
Ceric.07G081900.1 Ceric.07G081900 not classified & original description: pacid=50627936... 0.02 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.01 OrthoFinder output from all 47 species
Ceric.12G025700.1 Ceric.12G025700 not classified & original description: pacid=50601618... 0.02 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.02 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.01 OrthoFinder output from all 47 species
Ceric.22G073800.1 Ceric.22G073800 not classified & original description: pacid=50614043... 0.02 OrthoFinder output from all 47 species
Dac_g07481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43531 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05274 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g07156 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g28293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15725 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18216 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.01 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
Len_g02911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36740 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10692 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g31719 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34533 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g08599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15172 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16442 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04075 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30084 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03245 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007831 No alias not classified & original description: CDS=364-1791 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.02 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g32958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo108652 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo122934 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc01g098480.3.1 Solyc01g098480 Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species
Solyc03g115800.1.1 Solyc03g115800 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Spa_g40438 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26778 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g35082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019482_P001 Zm00001e019482 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
Zm00001e040920_P001 Zm00001e040920 Pentatricopeptide repeat-containing protein At3g26540... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0080156 mitochondrial mRNA modification IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 210
IPR002885 Pentatricopeptide_repeat 422 449
IPR002885 Pentatricopeptide_repeat 791 816
IPR002885 Pentatricopeptide_repeat 287 311
IPR002885 Pentatricopeptide_repeat 518 546
IPR002885 Pentatricopeptide_repeat 391 412
IPR002885 Pentatricopeptide_repeat 618 648
IPR002885 Pentatricopeptide_repeat 314 361
IPR002885 Pentatricopeptide_repeat 215 262
IPR002885 Pentatricopeptide_repeat 716 764
IPR002885 Pentatricopeptide_repeat 113 160
No external refs found!