AT1G75380 (BBD1, ATBBD1)

Aliases : BBD1, ATBBD1

Description : bifunctional nuclease in basal defense response 1

Gene families : OG0001063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001063_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G75380

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00133450	BBD1, ATBBD1,...	Bifunctional nuclease 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Adi_g059475	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g075726	BBD1, ATBBD1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07082	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g02366	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01537	BBD1, ATBBD1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g03113	BBD1, ATBBD1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08929	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.22G026600.1	Ceric.22G026600	not classified & original description: pacid=50614244...	0.05	OrthoFinder output from all 47 species
Ceric.32G034400.1	Ceric.32G034400	not classified & original description: pacid=50597704...	0.04	OrthoFinder output from all 47 species
Cre16.g688302	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g24289	BBD1, ATBBD1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03278	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g21453	BBD1, ATBBD1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04508	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009760001	No alias	Bifunctional nuclease 2 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
LOC_Os01g50622.1	LOC_Os01g50622	Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
LOC_Os08g26870.1	LOC_Os08g26870	Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Len_g07025	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g03796	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Mp1g11770.1	BBD1, ATBBD1	Bifunctional nuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Msp_g06066	BBD1, ATBBD1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11428	BBD1, ATBBD1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g12413	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10357	BBD1, ATBBD1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g39256	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27267	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g080700.4.1	Solyc04g080700	Bifunctional nuclease 2 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Solyc12g089220.3.1	BBD1, ATBBD1,...	Bifunctional nuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Zm00001e018013_P001	Zm00001e018013	Bifunctional nuclease 1 OS=Oryza sativa subsp. indica...	0.03	OrthoFinder output from all 47 species
Zm00001e022156_P001	BBD1, ATBBD1,...	Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031063	regulation of histone deacetylation	IGI	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IDA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IPI	Interproscan
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IGI	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090311	regulation of protein deacetylation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000293	ferric-chelate reductase activity	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0004103	choline kinase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0010044	response to aluminum ion	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
MF	GO:0010276	phytol kinase activity	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010942	positive regulation of cell death	IEP	HCCA
BP	GO:0012501	programmed cell death	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016722	oxidoreductase activity, acting on metal ions	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0043068	positive regulation of programmed cell death	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0051865	protein autoubiquitination	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0080005	photosystem stoichiometry adjustment	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001943	UVR_dom	291	316
IPR003729	Bi_nuclease_dom	133	247

External Links

No external refs found!

AT1G75380 (BBD1, ATBBD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation