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  5. AT1G76120

AT1G76120


Description : Pseudouridine synthase family protein


Gene families : OG0006025 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006025_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G76120

Target Alias Description ECC score Gene Family Method Actions
Dcu_g10557 No alias EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008716001 No alias RNA processing.RNA... 0.04 OrthoFinder output from all 47 species
Gb_06538 No alias tRNA pseudouridine synthase (TruA) 0.05 OrthoFinder output from all 47 species
LOC_Os02g44810.1 LOC_Os02g44810 tRNA pseudouridine synthase (TruA) 0.03 OrthoFinder output from all 47 species
Lfl_g02176 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g06450.1 No alias tRNA pseudouridine synthase (TruA) 0.03 OrthoFinder output from all 47 species
Msp_g09750 No alias EC_5.4 intramolecular transferase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015383_P004 Zm00001e015383 tRNA pseudouridine synthase (TruA) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006730 one-carbon metabolic process RCA Interproscan
MF GO:0009982 pseudouridine synthase activity ISS Interproscan
MF GO:0009982 pseudouridine synthase activity TAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0005677 chromatin silencing complex IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048572 short-day photoperiodism IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048575 short-day photoperiodism, flowering IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051569 regulation of histone H3-K4 methylation IEP HCCA
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP HCCA
BP GO:0061085 regulation of histone H3-K27 methylation IEP HCCA
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 275 377
No external refs found!