AT1G79590 (ATSYP52, SYP52)

Aliases : ATSYP52, SYP52

Description : syntaxin of plants 52

Gene families : OG0001545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001545_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79590

Target	Alias	Description	ECC score	Gene Family Method
Aev_g03075	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Ala_g13757	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Aop_g09567	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Aspi01Gene15433.t2	ATSYP52, SYP52,...	Qc-type SYP5-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Dcu_g13902	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
LOC_Os02g02720.3	ATSYP52, SYP52,...	SYP5 group Qc-type SNARE protein	0.04	OrthoFinder output from all 47 species
Len_g02678	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.04	OrthoFinder output from all 47 species
Len_g29175	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Lfl_g41096	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Mp3g14430.1	ATSYP52, SYP52	SYP5 group Qc-type SNARE protein	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014963	ATSYP52, SYP52	Qc-type SYP5-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Smo441012	ATSYP51, SYP51	Vesicle trafficking.SNARE target membrane recognition...	0.02	OrthoFinder output from all 47 species
Solyc07g065030.3.1	ATSYP51, SYP51,...	SYP5 group Qc-type SNARE protein	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	TAS	Interproscan
CC	GO:0010008	endosome membrane	NAS	Interproscan
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	TAS	Interproscan
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0006983	ER overload response	IEP	HCCA
BP	GO:0006984	ER-nucleus signaling pathway	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0071216	cellular response to biotic stimulus	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000727	T_SNARE_dom	174	225

External Links

No external refs found!

AT1G79590 (ATSYP52, SYP52)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation