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  5. AT1G79740

AT1G79740


Description : hAT transposon superfamily


Gene families : OG0000018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79740

Target Alias Description ECC score Gene Family Method Actions
Adi_g020090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g127603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61985.t1 Aspi01Gene61985 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G064600.1 Ceric.37G064600 not classified & original description: pacid=50616475... 0.03 OrthoFinder output from all 47 species
GSVIVT01017686001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01027351001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_31017 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g06588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008906 HATC_C_dom 513 582
IPR003656 Znf_BED 9 42
IPR007021 DUF659 151 296
No external refs found!