AT2G04630 (NRPB6B, NRPE6B)

Aliases : NRPB6B, NRPE6B

Description : RNA polymerase Rpb6

Gene families : OG0004292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004292_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G04630
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021589.12	NRPE6A, NRPD6A, NRPB6A	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder output from all 47 species
LOC_Os07g27930.1	NRPE6A, NRPD6A,...	subunit 6 of RNA polymerase	0.02	OrthoFinder output from all 47 species
MA_131181g0010	NRPE6A, NRPD6A, NRPB6A	DNA-directed RNA polymerases II, IV and V subunit 6A...	0.03	OrthoFinder output from all 47 species
Msp_g02616	NRPE6A, NRPD6A, NRPB6A	component *(NRP-ABCDE6) of RNA polymerase complexes &...	0.02	OrthoFinder output from all 47 species
Solyc09g010500.3.1	NRPB6B, NRPE6B,...	subunit 6 of RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005665	RNA polymerase II, core complex	IPI	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISS	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000164	protein phosphatase type 1 complex	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005047	signal recognition particle binding	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0007021	tubulin complex assembly	IEP	HCCA
BP	GO:0007349	cellularization	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009558	embryo sac cellularization	IEP	HCCA
BP	GO:0009960	endosperm development	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0010923	negative regulation of phosphatase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
BP	GO:0032515	negative regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0035305	negative regulation of dephosphorylation	IEP	HCCA
BP	GO:0035308	negative regulation of protein dephosphorylation	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006110	Pol_omega/Rpo6/RPB6	61	112

External Links

No external refs found!

AT2G04630 (NRPB6B, NRPE6B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation