AT2G17560 (NFD4, HMGB4, NFD04)

Aliases : NFD4, HMGB4, NFD04

Description : high mobility group B4

Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G17560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00227790	NFD2, HMG BETA...	HMG1/2-like protein OS=Vicia faba	0.05	OrthoFinder output from all 47 species
AMTR_s00093p00057150	evm_27.TU.AmTr_v1...	High mobility group B protein 6 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Adi_g007317	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Adi_g012117	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Adi_g018094	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Adi_g080941	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Adi_g080942	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Adi_g124291	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Ala_g04363	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Ala_g24042	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g13137	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Als_g26560	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aop_g06071	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aop_g23124	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aop_g38218	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Aop_g48668	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene15766.t2	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049182	NFD2, HMG BETA...	not classified & original description: CDS=249-659	0.04	OrthoFinder output from all 47 species
Cba_g10021	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Cba_g11082	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000073.45	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000663.58	ATHMG, HMG, SSRP1, NFD	No description available	0.02	OrthoFinder output from all 47 species
Cre06.g261450	ATHMG, HMG, SSRP1, NFD	No description available	0.1	OrthoFinder output from all 47 species
Dac_g07597	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Dac_g07598	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Dac_g12415	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Dac_g19456	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Dac_g20756	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Dac_g44453	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g40639	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Dde_g02569	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01021424001	No alias	High mobility group B protein 14 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01026642001	NFD2, HMG BETA...	HMG1/2-like protein OS=Glycine max	0.04	OrthoFinder output from all 47 species
GSVIVT01034361001	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_00374	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Gb_05796	NFD2, HMG BETA...	High mobility group B protein 1 OS=Arabidopsis thaliana...	0.11	OrthoFinder output from all 47 species
Gb_32435	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Gb_34784	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
LOC_Os02g15810.1	LOC_Os02g15810	High mobility group B protein 13 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
LOC_Os08g01100.1	HMGB6, LOC_Os08g01100	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
LOC_Os09g37910.1	NFD2, HMG BETA...	HMG1/2-like protein OS=Ipomoea nil (sp\|p40619\|hmgl_iponi : 99.4)	0.08	OrthoFinder output from all 47 species
Len_g16826	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Len_g21317	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Len_g30940	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g24536	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
MA_72555g0010	NFD2, HMG BETA...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_783123g0010	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp2g12330.1	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Msp_g01263	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Msp_g38531	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Nbi_g06088	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g12748	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g22023	NFD4, HMGB4, NFD04	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Pp3c11_8530V3.1	Pp3c11_8530	HMG (high mobility group) box protein	0.03	OrthoFinder output from all 47 species
Sam_g17368	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Sam_g31468	No alias	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Sam_g36464	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Sam_g40555	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Solyc02g082700.3.1	NFD2, HMG BETA...	HMG1/2-like protein OS=Ipomoea nil (sp\|p40619\|hmgl_iponi : 82.0)	0.05	OrthoFinder output from all 47 species
Solyc04g008820.3.1	HMGB6, Solyc04g008820	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
Solyc08g082070.3.1	Solyc08g082070	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Spa_g04270	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.07	OrthoFinder output from all 47 species
Spa_g10432	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Spa_g15059	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.08	OrthoFinder output from all 47 species
Spa_g16628	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Spa_g36216	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00083	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Tin_g03032	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Tin_g45467	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e024274_P002	HMGB6, Zm00001e024274	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003682	chromatin binding	TAS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006084	acetyl-CoA metabolic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006637	acyl-CoA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0008283	cell population proliferation	RCA	Interproscan
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0016572	obsolete histone phosphorylation	RCA	Interproscan
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
MF	GO:0030527	structural constituent of chromatin	TAS	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035383	thioester metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009071	HMG_box_dom	35	104

External Links

No external refs found!

AT2G17560 (NFD4, HMGB4, NFD04)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation