AT2G19760 (PFN1, PRF1)

Aliases : PFN1, PRF1

Description : profilin 1

Gene families : OG0000183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G19760

Target	Alias	Description	ECC score	Gene Family Method
Aev_g01728	PFN3, PRF3	profilin actin nucleation protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g62552	PFN1, PRF1	profilin actin nucleation protein & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14096	PRO2, PFN2, PRF2	profilin actin nucleation protein & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g04194	PFN3, PRF3	profilin actin nucleation protein & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g31946	PFN1, PRF1	profilin actin nucleation protein & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G056300.1	PFN3, PRF3,...	profilin actin nucleation protein & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07298	PRF4	profilin actin nucleation protein & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016960001	PRF5	Cytoskeleton.microfilament network.actin...	0.04	OrthoFinder output from all 47 species
Gb_19630	PRF5	profilin actin nucleation protein	0.03	OrthoFinder output from all 47 species
MA_534242g0010	PFN3, PRF3	profilin actin nucleation protein	0.03	OrthoFinder output from all 47 species
Msp_g10209	PFN3, PRF3	profilin actin nucleation protein & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g05123	PRO2, PFN2, PRF2	profilin actin nucleation protein & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g22089	PFN3, PRF3	profilin actin nucleation protein & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g57495	PRO2, PFN2, PRF2	profilin actin nucleation protein & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22032	PFN1, PRF1	profilin actin nucleation protein & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e019866_P001	PRF5, Zm00001e019866	profilin actin nucleation protein	0.06	OrthoFinder output from all 47 species
Zm00001e027449_P001	PRF4, Zm00001e027449	profilin actin nucleation protein	0.04	OrthoFinder output from all 47 species
Zm00001e029080_P001	PRF4, Zm00001e029080	profilin actin nucleation protein	0.02	OrthoFinder output from all 47 species
Zm00001e032207_P001	PRF4, Zm00001e032207	profilin actin nucleation protein	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005737	cytoplasm	TAS	Interproscan
CC	GO:0005819	spindle	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	ISS	Interproscan
BP	GO:0007015	actin filament organization	RCA	Interproscan
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008154	actin polymerization or depolymerization	IDA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009524	phragmoplast	IDA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015629	actin cytoskeleton	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
CC	GO:0008180	COP9 signalosome	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0080170	hydrogen peroxide transmembrane transport	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005455	PFN	1	130

External Links

No external refs found!

AT2G19760 (PFN1, PRF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation