AT2G19810

Description : CCCH-type zinc finger family protein

Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G19810

Target	Alias	Description	ECC score	Gene Family Method
AT5G07500	PEI1	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.03	OrthoFinder output from all 47 species
Adi_g033634	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Adi_g045996	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054846	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Adi_g057405	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.07	OrthoFinder output from all 47 species
Adi_g075797	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Aev_g15200	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aob_g20797	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aop_g06090	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Aspi01Gene30050.t1	Aspi01Gene30050	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene67069.t1	Aspi01Gene67069	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene68944.t1	Aspi01Gene68944	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Azfi_s0076.g037758	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Azfi_s0203.g057679	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ceric.02G081600.1	Ceric.02G081600	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ceric.07G046400.1	Ceric.07G046400	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ceric.17G068000.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.08	OrthoFinder output from all 47 species
Ceric.33G056800.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cre07.g326150	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.02	OrthoFinder output from all 47 species
Dac_g02872	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dac_g08831	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dac_g09656	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Dcu_g16518	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ehy_g09166	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
GSVIVT01025263001	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.06	OrthoFinder output from all 47 species
LOC_Os05g10670.1	LOC_Os05g10670	mRNA-binding regulatory factor (TZF)	0.05	OrthoFinder output from all 47 species
LOC_Os05g45020.1	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Lfl_g28211	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g04934	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Msp_g09633	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g15984	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g25247	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g25976	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pir_g39344	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.08	OrthoFinder output from all 47 species
Pnu_g24839	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ppi_g01109	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004066	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017049	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.06	OrthoFinder output from all 47 species
Tin_g02786	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Tin_g14922	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Zm00001e016582_P001	Zm00001e016582	mRNA-binding regulatory factor (TZF)	0.07	OrthoFinder output from all 47 species
Zm00001e018292_P001	Zm00001e018292	mRNA-binding regulatory factor (TZF)	0.05	OrthoFinder output from all 47 species
Zm00001e027132_P001	Zm00001e027132	mRNA-binding regulatory factor (TZF)	0.05	OrthoFinder output from all 47 species
Zm00001e027454_P001	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006650	glycerophospholipid metabolic process	None	Extended
BP	GO:0006661	phosphatidylinositol biosynthetic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006787	porphyrin-containing compound catabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015996	chlorophyll catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033015	tetrapyrrole catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0045017	glycerolipid biosynthetic process	None	Extended
BP	GO:0046149	pigment catabolic process	None	Extended
BP	GO:0046474	glycerophospholipid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046486	glycerolipid metabolic process	None	Extended
BP	GO:0046488	phosphatidylinositol metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
MF	GO:0031491	nucleosome binding	IEP	HCCA
MF	GO:0031492	nucleosomal DNA binding	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G19810

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation