AT2G20160 (MEO, ASK17)

Aliases : MEO, ASK17

Description : E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G20160

Target	Alias	Description	ECC score	Gene Family Method
AT2G03160	SK19, ASK19	SKP1-like 19	0.06	OrthoFinder output from all 47 species
AT2G03170	ASK14, SK14	SKP1-like 14	0.07	OrthoFinder output from all 47 species
AT3G60010	SK13, ASK13	SKP1-like 13	0.06	OrthoFinder output from all 47 species
AT3G60020	SK5, ASK5	SKP1-like 5	0.04	OrthoFinder output from all 47 species
AT4G34470	SK12, ASK12	SKP1-like 12	0.07	OrthoFinder output from all 47 species
Aop_g66890	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os07g05160.1	ASK4, SK4, LOC_Os07g05160	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
LOC_Os09g10200.1	ASK1, ATSKP1,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
LOC_Os09g10270.1	ASK4, SK4, LOC_Os09g10270	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	4	63
IPR016072	Skp1_comp_dimer	102	148

External Links

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