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AT2G24590 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : RNA recognition motif and CCHC-type zinc finger domains containing protein


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G24590

Target Alias Description ECC score Gene Family Method Actions
Als_g22485 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G052000.1 At-RSZ22a,... RNA splicing factor *(RSZ21/22) & original description:... 0.07 OrthoFinder output from all 47 species
Cre09.g408200 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Dcu_g00843 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g41811 At-RSZ22a, RSZ22a not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033172001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
LOC_Os02g54770.2 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Sam_g13208 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc08g069120.4.1 At-RSZ22a,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g01672 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24323 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015077_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e016090_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.08 OrthoFinder output from all 47 species
Zm00001e022939_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e023726_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.09 OrthoFinder output from all 47 species
Zm00001e036288_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008380 RNA splicing NAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 97 112
IPR000504 RRM_dom 4 61
No external refs found!