Description : BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink).
Gene families : OG0001835 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001835_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT2G25670 | |
| Cluster | HCCA: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aspi01Gene64155.t1 | Aspi01Gene64155 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.05G058400.1 | Ceric.05G058400 | not classified & original description: pacid=50577638... | 0.05 | OrthoFinder output from all 47 species | |
| Smo444781 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g018490.3.1 | Solyc05g018490 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g067880.4.1 | Solyc08g067880 | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| Solyc08g150138.1.1 | Solyc08g150138 | no hits & (original description: none) | 0.11 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| CC | GO:0005829 | cytosol | IDA | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000412 | histone peptidyl-prolyl isomerization | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0005527 | macrolide binding | IEP | HCCA |
| MF | GO:0005528 | FK506 binding | IEP | HCCA |
| CC | GO:0005654 | nucleoplasm | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| CC | GO:0005778 | peroxisomal membrane | IEP | HCCA |
| CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006312 | mitotic recombination | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0007005 | mitochondrion organization | IEP | HCCA |
| MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
| BP | GO:0009560 | embryo sac egg cell differentiation | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | HCCA |
| CC | GO:0031903 | microbody membrane | IEP | HCCA |
| MF | GO:0033218 | amide binding | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| BP | GO:0042991 | obsolete transcription factor import into nucleus | IEP | HCCA |
| CC | GO:0048500 | signal recognition particle | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
