AT2G26500

Description : cytochrome b6f complex subunit (petM), putative

Gene families : OG0007944 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007944_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G26500
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00208110	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.05	OrthoFinder output from all 47 species
Aev_g07600	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.02	OrthoFinder output from all 47 species
Als_g54693	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.03	OrthoFinder output from all 47 species
Aop_g09963	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
Ceric.32G011800.1	Ceric.32G011800	component *(PetM/VII) of cytochrome b6/f complex &...	0.09	OrthoFinder output from all 47 species
Dde_g41229	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01009587001	No alias	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.1	OrthoFinder output from all 47 species
Gb_00822	No alias	component PetM/VII of cytochrome b6/f complex	0.05	OrthoFinder output from all 47 species
LOC_Os03g55720.2	LOC_Os03g55720	component PetM/VII of cytochrome b6/f complex	0.09	OrthoFinder output from all 47 species
Len_g11628	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.03	OrthoFinder output from all 47 species
Len_g11629	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
Len_g29641	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.05	OrthoFinder output from all 47 species
Len_g37664	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.03	OrthoFinder output from all 47 species
MA_10294942g0010	No alias	component PetM/VII of cytochrome b6/f complex	0.04	OrthoFinder output from all 47 species
Mp1g07170.1	No alias	component PetM/VII of cytochrome b6/f complex	0.06	OrthoFinder output from all 47 species
Ore_g10091	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
Ore_g17180	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
Pp3c6_20300V3.1	Pp3c6_20300	cytochrome b6f complex subunit (petM), putative	0.02	OrthoFinder output from all 47 species
Ppi_g29343	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g55276	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.03	OrthoFinder output from all 47 species
Solyc01g109040.4.1	Solyc01g109040	component PetM/VII of cytochrome b6/f complex	0.03	OrthoFinder output from all 47 species
Tin_g27169	No alias	component *(PetM/VII) of cytochrome b6/f complex &...	0.04	OrthoFinder output from all 47 species
Zm00001e011966_P002	Zm00001e011966	component PetM/VII of cytochrome b6/f complex	0.06	OrthoFinder output from all 47 species
Zm00001e011967_P001	Zm00001e011967	component PetM/VII of cytochrome b6/f complex	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009496	plastoquinol--plastocyanin reductase activity	ISS	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052880	oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012595	PetM_cyt_b6/f_cplx_su7	89	117

External Links

No external refs found!

AT2G26500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation