1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G27720

AT2G27720


Description : 60S acidic ribosomal protein family


Gene families : OG0000215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G27720
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00177850 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Adi_g019936 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g025071 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g084794 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g098496 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g106129 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g107170 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g118242 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g127327 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g46560 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g18224 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ala_g18468 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ala_g31631 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g00354 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g24527 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g24871 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g33572 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g55993 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g63181 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g08057 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aob_g18712 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aob_g30341 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g38228 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g40974 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g06840 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Aop_g18711 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g20777 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g21465 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g22313 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g29386 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g40394 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g45817 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g54753 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene10073.t1 Aspi01Gene10073 component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0013.g013340 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Azfi_s0076.g037804 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Cba_g21272 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g28150 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g34407 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g50883 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cba_g68665 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g74453 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cba_g78022 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.02G042100.1 Ceric.02G042100 component *(RPP2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.16G032200.1 Ceric.16G032200 component *(RPP2) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.20G061600.1 Ceric.20G061600 component *(RPP2) of large ribosomal-subunit (LSU)... 0.22 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020830.75 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Cre02.g143050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Dac_g03976 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Dac_g28530 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dac_g32367 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dac_g45668 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g27939 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g29004 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Dcu_g31241 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g34853 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g36046 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g44019 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dde_g03574 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g37158 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g42097 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g42369 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g04646 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g16099 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g31970 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01031366001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01033814001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder output from all 47 species
GSVIVT01034757001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_39007 No alias component RPP2 of LSU proteome component 0.21 OrthoFinder output from all 47 species
LOC_Os01g09510.4 LOC_Os01g09510 component RPP2 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Len_g25084 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Len_g50213 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Lfl_g15507 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g30448 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_10431146g0010 No alias component RPP2 of LSU proteome component 0.06 OrthoFinder output from all 47 species
MA_177584g0010 No alias component RPP2 of LSU proteome component 0.16 OrthoFinder output from all 47 species
MA_8598039g0010 No alias component RPP2 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Mp1g06260.1 No alias component RPP2 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Msp_g12854 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g25924 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g33244 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Msp_g40276 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Nbi_g02818 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g16311 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g22542 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g06198 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g06199 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Pir_g02415 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g23184 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pnu_g33886 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_27060V3.1 Pp3c1_27060 60S acidic ribosomal protein family 0.22 OrthoFinder output from all 47 species
Ppi_g16088 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g21789 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g22305 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ppi_g22864 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g26787 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g36221 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g38822 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g49505 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g50722 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g51791 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g54473 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012004 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g00046 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g02585 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g05319 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g08492 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g17151 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Sam_g22627 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g23353 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g23852 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g23854 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g34267 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g38961 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g40093 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Sam_g44452 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g45942 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g46268 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g46778 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g48423 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g53009 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo139397 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder output from all 47 species
Solyc01g009447.1.1 Solyc01g009447 component RPP2 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Solyc06g074430.4.1 Solyc06g074430 component RPP2 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc11g067100.2.1 Solyc11g067100 component RPP2 of LSU proteome component 0.28 OrthoFinder output from all 47 species
Spa_g37475 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g37476 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g40832 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g42923 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g53019 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g12451 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Tin_g21399 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Tin_g44881 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006597_P001 Zm00001e006597 component RPP2 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Zm00001e026591_P001 Zm00001e026591 component RPP2 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Zm00001e026592_P001 Zm00001e026592 component RPP2 of LSU proteome component 0.27 OrthoFinder output from all 47 species
Zm00001e026593_P001 Zm00001e026593 component RPP2 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Zm00001e041900_P001 Zm00001e041900 component RPP2 of LSU proteome component 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006414 translational elongation ISS Interproscan
BP GO:0009409 response to cold IEP Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!