AT2G32220

Description : Ribosomal L27e protein family

Gene families : OG0000924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000924_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G32220
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00176990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT3G22230	No alias	Ribosomal L27e protein family	0.03	OrthoFinder output from all 47 species
AT4G15000	No alias	Ribosomal L27e protein family	0.03	OrthoFinder output from all 47 species
Adi_g088547	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g21879	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g16882	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g30907	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g33173	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre17.g701650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from all 47 species
Dac_g26159	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g32145	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
LOC_Os02g18380.1	LOC_Os02g18380	component RPL27 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_3390g0010	No alias	component RPL27 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp4g23910.1	No alias	component RPL27 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Nbi_g20151	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g04282	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g14343	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025908	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g13937	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g20317	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g30675	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Sam_g30677	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g32165	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g44975	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001141	Ribosomal_L27e	52	135

External Links

No external refs found!

AT2G32220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation