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  5. AT2G34750

AT2G34750


Description : RNA polymerase I specific transcription initiation factor RRN3 protein


Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G34750

Target Alias Description ECC score Gene Family Method Actions
Dcu_g24337 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Dde_g13092 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g06620 No alias basal transcription factor *(TFIa/RRN3) & original... 0.05 OrthoFinder output from all 47 species
Ore_g07151 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Sam_g27581 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g082340.3.1 Solyc02g082340 basal transcription factor (TFIa/RRN3) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006360 transcription by RNA polymerase I ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
CC GO:0030176 obsolete integral component of endoplasmic reticulum membrane IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901402 negative regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901464 negative regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1902325 negative regulation of chlorophyll biosynthetic process IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 25 543
No external refs found!