AT2G36660 (PAB7)

Aliases : PAB7

Description : poly(A) binding protein 7

Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G36660
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
Adi_g025026	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g087392	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g087393	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Cba_g27225	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Dde_g51529	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
MA_36585g0010	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor (PABP)	0.01	OrthoFinder output from all 47 species
Solyc04g072043.1.1	PAB5, Solyc04g072043	mRNA poly-A-tail binding factor (PABP)	0.03	OrthoFinder output from all 47 species
Solyc10g085750.2.1	PAB7, Solyc10g085750	mRNA poly-A-tail binding factor (PABP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	114	182
IPR000504	RRM_dom	26	95
IPR000504	RRM_dom	203	271
IPR000504	RRM_dom	306	374
IPR002004	PABP_HYD	525	581

External Links

No external refs found!