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  5. AT2G37510

AT2G37510


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G37510
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00103290 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 2, mitochondrial... 0.04 OrthoFinder output from all 47 species
AMTR_s00114p00125610 evm_27.TU.AmTr_v1... Small RNA-binding protein 11, chloroplastic... 0.03 OrthoFinder output from all 47 species
Adi_g016847 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20823 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009790 CCR2, ATGRP7,... not classified & original description: CDS=136-657 0.03 OrthoFinder output from all 47 species
Azfi_s0062.g035257 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=192-584 0.03 OrthoFinder output from all 47 species
Ceric.35G013300.1 GR-RBP3, Ceric.35G013300 RNA editing factor *(ORRM3) & original description:... 0.03 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g02153 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09825 GR-RBP4, GRP4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021024001 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01025527001 No alias Organelle RRM domain-containing protein 2, mitochondrial... 0.04 OrthoFinder output from all 47 species
Len_g03058 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436424g0010 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
MA_77292g0010 No alias RNA editing factor (ORRM) 0.06 OrthoFinder output from all 47 species
Mp1g21200.1 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Ore_g07233 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32937 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12344 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12375 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19209 CCR1, GR-RBP8,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from all 47 species
Sam_g38660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Smo406315 GR-RBP4, GRP4 Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 OrthoFinder output from all 47 species
Solyc02g088790.3.1 GR-RBP3, Solyc02g088790 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Solyc09g011210.4.1 Solyc09g011210 Organelle RRM domain-containing protein 6, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g10878 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22379 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27808 GR-RBP4, GRP4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008185_P001 Zm00001e008185 Small RNA-binding protein 11, chloroplastic... 0.03 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Zm00001e035491_P001 GR-RBP5, Zm00001e035491 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Zm00001e040294_P001 Zm00001e040294 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 102
No external refs found!