AT2G37950

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G37950
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AT3G09760	No alias	RING/U-box superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g011811	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13796	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g15074	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0059.g034655	No alias	not classified & original description: CDS=1081-1965	0.08	OrthoFinder output from all 47 species
Azfi_s0096.g043766	No alias	not classified & original description: CDS=488-1357	0.04	OrthoFinder output from all 47 species
Cba_g68167	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.15G009300.1	Ceric.15G009300	E3 ubiquitin ligase & original description:...	0.01	OrthoFinder output from all 47 species
Dac_g11528	No alias	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01025179001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
LOC_Os05g37900.1	LOC_Os05g37900	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Nbi_g00704	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03458	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g15270	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43716	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g48723	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g07939	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018968	No alias	bHLH-type transcription factor & original description: CDS=1-675	0.01	OrthoFinder output from all 47 species
Solyc11g069350.2.1	Solyc11g069350	RING-v-class E3 ligase	0.01	OrthoFinder output from all 47 species
Tin_g14984	No alias	E3 ubiquiTin ligase & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	84	132

External Links

No external refs found!

AT2G37950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation