AT2G38090

Description : Duplicated homeodomain-like superfamily protein

Gene families : OG0000160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G38090

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00022290	evm_27.TU.AmTr_v1...	Transcription factor SRM1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Adi_g013787	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g021554	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Adi_g075106	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g106458	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Aev_g03908	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Als_g03616	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17157.t2	Aspi01Gene17157	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene17161.t1	Aspi01Gene17161	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene41318.t1	Aspi01Gene41318	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ceric.11G039500.1	Ceric.11G039500	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ceric.14G074800.1	Ceric.14G074800	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dac_g03644	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g12105	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01013684001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	OrthoFinder output from all 47 species
GSVIVT01013871001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	OrthoFinder output from all 47 species
GSVIVT01034001001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g04930.1	LOC_Os01g04930	transcription factor (MYB-related)	0.05	OrthoFinder output from all 47 species
Mp5g11830.1	No alias	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Msp_g03909	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Pir_g63199	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Solyc12g044610.2.1	Solyc12g044610	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Tin_g06825	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e002368_P001	Zm00001e002368	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Zm00001e037865_P001	Zm00001e037865	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	28	73
IPR001005	SANT/Myb	142	186

External Links

No external refs found!

AT2G38090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation