AT2G38950

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G38950

Target	Alias	Description	ECC score	Gene Family Method
Adi_g056689	PKDM7D	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g13779	No alias	histone demethylase *(KDM5) & original description: none	0.07	OrthoFinder output from all 47 species
Ceric.01G024900.1	Ceric.01G024900	histone demethylase *(KDM5) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.09G000100.1	PKDM7D, Ceric.09G000100	histone demethylase *(PKDM7) & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01019761001	No alias	RNA biosynthesis.transcriptional activation.JUMONJI...	0.02	OrthoFinder output from all 47 species
GSVIVT01028351001	PKDM7D	RNA biosynthesis.transcriptional activation.JUMONJI...	0.03	OrthoFinder output from all 47 species
GSVIVT01037956001	PKDM7B, JMJ14	RNA biosynthesis.transcriptional activation.JUMONJI...	0.04	OrthoFinder output from all 47 species
Lfl_g04280	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17312	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g21978	PKDM7D	histone demethylase *(PKDM7) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004057	arginyltransferase activity	IEP	HCCA
MF	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016598	protein arginylation	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016755	aminoacyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	HCCA
MF	GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	IEP	HCCA
MF	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050994	regulation of lipid catabolic process	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
MF	GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	322	437
IPR003349	JmjN	109	142
IPR004198	Znf_C5HC2	544	594

External Links

No external refs found!

AT2G38950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation