AT2G39900

Description : GATA type zinc finger transcription factor family protein

Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39900

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00199510	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.LIM...	0.02	OrthoFinder output from all 47 species
AT3G55770	No alias	GATA type zinc finger transcription factor family protein	0.04	OrthoFinder output from all 47 species
Adi_g004397	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g076175	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g077331	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g106596	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g19801	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07996	No alias	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g21872	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18839	No alias	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene62649.t1	WLIM1, Aspi01Gene62649	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g10082	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g65927	No alias	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g34912	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g30378	WLIM1	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03324	No alias	LIM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g27988	WLIM1	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01007812001	WLIM1	RNA biosynthesis.transcriptional activation.LIM...	0.04	OrthoFinder output from all 47 species
GSVIVT01026849001	No alias	RNA biosynthesis.transcriptional activation.LIM...	0.03	OrthoFinder output from all 47 species
Gb_11447	WLIM1	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
LOC_Os10g35930.1	LOC_Os10g35930	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
LOC_Os12g32620.1	WLIM1, LOC_Os12g32620	transcription factor (LIM)	0.04	OrthoFinder output from all 47 species
MA_104604g0010	WLIM1	transcription factor (LIM)	0.06	OrthoFinder output from all 47 species
Nbi_g00234	No alias	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g08756	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741	WLIM1	LIM-type transcription factor & original description: CDS=1-612	0.03	OrthoFinder output from all 47 species
Sam_g26177	No alias	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g077780.3.1	WLIM1, Solyc04g077780	transcription factor (LIM)	0.04	OrthoFinder output from all 47 species
Solyc05g052780.4.1	Solyc05g052780	transcription factor (LIM)	0.04	OrthoFinder output from all 47 species
Solyc10g017520.3.1	Solyc10g017520	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Spa_g22855	WLIM1	LIM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g53439	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g04312	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001173_P001	Zm00001e001173	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Zm00001e018310_P001	WLIM1, Zm00001e018310	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005856	cytoskeleton	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009825	multidimensional cell growth	RCA	Interproscan
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	RCA	Interproscan
CC	GO:0015629	actin cytoskeleton	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051015	actin filament binding	IDA	Interproscan
BP	GO:0051017	actin filament bundle assembly	IDA	Interproscan
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001781	Znf_LIM	109	164
IPR001781	Znf_LIM	10	65

External Links

No external refs found!

AT2G39900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation