AT2G40200

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001169_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G40200
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00170710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
AT1G68810	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
AT2G41130	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	OrthoFinder output from all 47 species
AT3G25710	BHLH32, ATAIG1, TMO5	basic helix-loop-helix 32	0.05	OrthoFinder output from all 47 species
Ala_g21842	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g36805	No alias	bHLH-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene06352.t1	Aspi01Gene06352	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g29521	No alias	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g03913	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011960001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01020688001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.08	OrthoFinder output from all 47 species
GSVIVT01025747001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01032789001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
LOC_Os01g06640.1	LOC_Os01g06640	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
LOC_Os01g11910.1	LOC_Os01g11910	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os05g07120.1	LOC_Os05g07120	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
LOC_Os08g37290.1	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Msp_g05533	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g11399	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23095	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17089	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g21895	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g47424	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023505	No alias	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g51509	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Smo56610	BHLH32, ATAIG1, TMO5	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Solyc02g076920.3.1	Solyc02g076920	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc03g095980.3.1	Solyc03g095980	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc04g006990.3.1	Solyc04g006990	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc04g076240.3.1	Solyc04g076240	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc05g009880.3.1	Solyc05g009880	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc06g051260.4.1	Solyc06g051260	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Solyc07g053290.3.1	Solyc07g053290	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc10g078380.2.1	Solyc10g078380	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Spa_g13095	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g13177	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001119_P001	Zm00001e001119	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Zm00001e004145_P001	Zm00001e004145	transcription factor (bHLH)	0.09	OrthoFinder output from all 47 species
Zm00001e006132_P001	Zm00001e006132	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e009972_P001	Zm00001e009972	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e016455_P001	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e016835_P001	Zm00001e016835	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e022445_P001	Zm00001e022445	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e031100_P001	Zm00001e031100	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e034395_P001	Zm00001e034395	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e038535_P001	Zm00001e038535	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010110	regulation of photosynthesis, dark reaction	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034059	response to anoxia	IEP	HCCA
BP	GO:0034605	cellular response to heat	IEP	HCCA
BP	GO:0036293	response to decreased oxygen levels	IEP	HCCA
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070482	response to oxygen levels	IEP	HCCA
BP	GO:0071453	cellular response to oxygen levels	IEP	HCCA
BP	GO:0071454	cellular response to anoxia	IEP	HCCA
BP	GO:0080152	regulation of reductive pentose-phosphate cycle	IEP	HCCA
BP	GO:0080153	negative regulation of reductive pentose-phosphate cycle	IEP	HCCA
BP	GO:1905156	negative regulation of photosynthesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	65	111

External Links

No external refs found!

AT2G40200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation