AT2G41130

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001169_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G41130

Target	Alias	Description	ECC score	Gene Family Method
AT2G40200	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	OrthoFinder output from all 47 species
Aev_g03176	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36805	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene06352.t1	Aspi01Gene06352	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene19449.t1	Aspi01Gene19449	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0002.g001194	No alias	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0037.g025937	No alias	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.01G052000.1	Ceric.01G052000	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dde_g03913	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g01415	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011960001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.09	OrthoFinder output from all 47 species
GSVIVT01020688001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01025747001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01032789001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
LOC_Os03g15440.1	LOC_Os03g15440	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os05g07120.1	LOC_Os05g07120	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os08g33590.1	LOC_Os08g33590	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species
LOC_Os08g37290.1	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os09g24490.1	LOC_Os09g24490	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Len_g18408	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_132680g0010	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_65818g0010	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Msp_g11399	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23095	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g17089	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g21895	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19331	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g24888	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g51509	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Smo412681	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
Solyc04g006990.3.1	Solyc04g006990	transcription factor (bHLH)	0.1	OrthoFinder output from all 47 species
Solyc04g076240.3.1	Solyc04g076240	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc05g009880.3.1	Solyc05g009880	transcription factor (bHLH)	0.12	OrthoFinder output from all 47 species
Solyc06g051260.4.1	Solyc06g051260	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc07g053290.3.1	Solyc07g053290	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc10g078380.2.1	Solyc10g078380	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g13095	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g17973	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001119_P001	Zm00001e001119	transcription factor (bHLH)	0.1	OrthoFinder output from all 47 species
Zm00001e004145_P001	Zm00001e004145	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e006132_P001	Zm00001e006132	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
Zm00001e009812_P001	Zm00001e009812	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
Zm00001e009972_P001	Zm00001e009972	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Zm00001e016455_P001	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e016835_P001	Zm00001e016835	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e022445_P001	Zm00001e022445	transcription factor (bHLH)	0.11	OrthoFinder output from all 47 species
Zm00001e034395_P001	Zm00001e034395	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species
Zm00001e038535_P001	Zm00001e038535	transcription factor (bHLH)	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009823	cytokinin catabolic process	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010065	primary meristem tissue development	IEP	HCCA
BP	GO:0010067	procambium histogenesis	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	HCCA
BP	GO:0032350	regulation of hormone metabolic process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0042447	hormone catabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045597	positive regulation of cell differentiation	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0048468	cell development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048508	embryonic meristem development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0055072	iron ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0080147	root hair cell development	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	70	115

External Links

No external refs found!

AT2G41130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation