1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g29965

Pnu_g29965


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g29965

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62402 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene20467.t1 EMB2758, Aspi01Gene20467 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34733.t1 Aspi01Gene34733 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007441 No alias not classified & original description: CDS=1-1959 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011626 CRR22 not classified & original description: CDS=1-2025 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g027128 No alias not classified & original description: CDS=146-1684 0.04 OrthoFinder output from all 47 species
Azfi_s0077.g038002 No alias not classified & original description: CDS=1-2019 0.04 OrthoFinder output from all 47 species
Azfi_s0168.g054647 No alias not classified & original description: CDS=1-2919 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055668 No alias not classified & original description: CDS=1-711 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.02 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g07291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35188 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_36775 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.02 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g00845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Msp_g26112 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g42136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63504 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002368 No alias not classified & original description: CDS=1-543 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005946 No alias not classified & original description: CDS=1-1029 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011872 No alias not classified & original description: CDS=1-2532 0.03 OrthoFinder output from all 47 species
Sam_g13972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo132819 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g02637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 480 527
IPR002885 Pentatricopeptide_repeat 277 325
IPR002885 Pentatricopeptide_repeat 379 425
IPR002885 Pentatricopeptide_repeat 176 224
IPR002885 Pentatricopeptide_repeat 555 581
IPR002885 Pentatricopeptide_repeat 583 609
IPR002885 Pentatricopeptide_repeat 454 479
No external refs found!