AT2G41900

Description : CCCH-type zinc finger protein with ARM repeat domain

Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G41900

Target	Alias	Description	ECC score	Gene Family Method
Adi_g049591	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g06734	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene40185.t1	Aspi01Gene40185	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene43293.t1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cre03.g146267	ATTZF1, ATCTH	RNA biosynthesis.transcriptional activation.C3H zinc...	0.04	OrthoFinder output from all 47 species
Len_g21927	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Lfl_g24865	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ore_g41660	ATTZF1, ATCTH	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g10379	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Spa_g31285	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Zm00001e005347_P001	Zm00001e005347	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Zm00001e035289_P002	Zm00001e035289	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020683	DUF3447	86	158
IPR000571	Znf_CCCH	306	326

External Links

No external refs found!

AT2G41900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation