AT2G43010 (SRL2, PIF4, AtPIF4)

Aliases : SRL2, PIF4, AtPIF4

Description : phytochrome interacting factor 4

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G43010
Cluster	HCCA: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00267570	UNE12,...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AMTR_s00022p00228970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
AMTR_s00065p00184910	LRL1,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AMTR_s00079p00137860	BEE3,...	External stimuli response.light.UV-A/blue...	0.02	OrthoFinder output from all 47 species
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.04	OrthoFinder output from all 47 species
AT4G00120	GT140, IND1, IND, EDA33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
AT4G02590	UNE12	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.04	OrthoFinder output from all 47 species
AT5G50915	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g007889	LRL1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g036691	LRL3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g053074	ATRSL1, RSL1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g01300	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g08253	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g23312	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06285	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07900	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08014	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g10304	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18353	HEC1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g26070	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26152	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ala_g26607	RSL2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33578	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18590	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g17948	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26245	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g41589	RSL2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g63732	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46202.t1	Aspi01Gene46202	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene54622.t1	LRL3, Aspi01Gene54622	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene60934.t1	PIF3, POC1,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene66676.t2	Aspi01Gene66676	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene67543.t1	SPT, Aspi01Gene67543	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0083.g038807	HEC1	bHLH-type transcription factor & original description: CDS=1-1287	0.03	OrthoFinder output from all 47 species
Azfi_s0173.g055808	SPT	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g16021	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Cba_g18078	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g19851	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g25222	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34527	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.22G036800.1	SPT, Ceric.22G036800	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.32G068300.1	Ceric.32G068300	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g23770	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Dac_g30817	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g39719	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g49282	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g12124	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13825	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g28520	ALC	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g31834	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013553001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01018164001	UNE10	Transcription factor UNE10 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
GSVIVT01018165001	UNE10	RNA biosynthesis.transcriptional activation.bHLH...	0.07	OrthoFinder output from all 47 species
GSVIVT01020814001	SRL2, PIF4, AtPIF4	External stimuli response.light.red/far red light.PIF...	0.04	OrthoFinder output from all 47 species
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01028516001	PIL5, PIF1	External stimuli response.light.red/far red light.PIF...	0.04	OrthoFinder output from all 47 species
Gb_05320	LRL3	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Gb_22201	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Gb_28850	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os05g04740.2	PIF3, POC1,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os05g46370.1	LOC_Os05g46370	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os06g06900.1	SPT, LOC_Os06g06900	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g01700.1	HEC3, LOC_Os08g01700	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g39630.1	LOC_Os08g39630	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os09g25040.1	LRL1, LOC_Os09g25040	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os09g29830.1	LOC_Os09g29830	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
LOC_Os12g40590.1	SPT, LOC_Os12g40590	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os12g41650.2	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Len_g22408	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g24250	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g37679	RHD6	LHW/LHL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g30069	RSL2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g39067	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_120179g0010	UNE12	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
MA_158850g0010	LRL3	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_88831g0010	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_9115341g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Mp3g17350.1	SPT	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Mp5g18910.1	HEC1	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Mp6g21470.1	RSL2	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g09011	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14136	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g35112	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g00901	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g07688	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g15688	HEC1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g18447	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19546	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19998	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g33206	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ore_g34727	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ore_g42033	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ore_g43163	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g06488	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pir_g11202	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g27427	No alias	transcriptional co-activator *(FBH) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g45935	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Pnu_g08374	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g09963	HEC1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g27016	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33726	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05246	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06946	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g43879	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925	HEC2	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g36377	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo405220	HEC1	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Solyc01g107140.3.1	Solyc01g107140	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc03g113560.4.1	Solyc03g113560	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc04g007300.4.1	BEE3, Solyc04g007300	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc06g008030.3.1	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Solyc06g062460.3.1	Solyc06g062460	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc06g069600.3.1	UNE10, Solyc06g069600	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc07g043580.4.1	PIL6, PIF5,...	transcription factor (bHLH). PIF red/far-red light...	0.04	OrthoFinder output from all 47 species
Solyc11g005780.3.1	HEC3, Solyc11g005780	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc12g088380.1.1	RSL2, Solyc12g088380	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g03670	RSL2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22560	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g23827	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g31061	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g57226	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g13248	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g13566	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g21077	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Tin_g21602	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g31631	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Tin_g38881	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006917_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e023698_P001	LRL3, Zm00001e023698	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e032950_P002	UNE12, Zm00001e032950	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006873	cellular monoatomic ion homeostasis	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009704	de-etiolation	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	IMP	Interproscan
BP	GO:0010017	red or far-red light signaling pathway	RCA	Interproscan
BP	GO:0010114	response to red light	None	Extended
BP	GO:0010161	red light signaling pathway	IGI	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010600	regulation of auxin biosynthetic process	IDA	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	IDA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030003	cellular monoatomic cation homeostasis	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071491	cellular response to red light	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090354	regulation of auxin metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000900	mRNA regulatory element binding translation repressor activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006544	glycine metabolic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009638	phototropism	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
MF	GO:0009881	photoreceptor activity	IEP	HCCA
MF	GO:0009882	blue light photoreceptor activity	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
CC	GO:0009898	cytoplasmic side of plasma membrane	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0009903	chloroplast avoidance movement	IEP	HCCA
BP	GO:0009904	chloroplast accumulation movement	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
CC	GO:0009986	cell surface	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010076	maintenance of floral meristem identity	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
BP	GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010360	negative regulation of anion channel activity	IEP	HCCA
BP	GO:0010361	regulation of anion channel activity by blue light	IEP	HCCA
BP	GO:0010362	negative regulation of anion channel activity by blue light	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030371	translation repressor activity	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032410	negative regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032413	negative regulation of ion transmembrane transporter activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034763	negative regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034766	negative regulation of monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043271	negative regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051051	negative regulation of transport	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0061077	chaperone-mediated protein folding	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071071	regulation of phospholipid biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
CC	GO:0098562	cytoplasmic side of membrane	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA
BP	GO:1902395	regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	HCCA
BP	GO:1903792	negative regulation of monoatomic anion transport	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA
BP	GO:1903960	negative regulation of anion transmembrane transport	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	261	307

External Links

No external refs found!

AT2G43010 (SRL2, PIF4, AtPIF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation