AT2G43030


Description : Ribosomal protein L3 family protein


Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43030
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00166020 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Adi_g022051 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Adi_g022052 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g05882 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ala_g05869 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Als_g10884 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g03365 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g26780 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Aspi01Gene69382.t1 Aspi01Gene69382 component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Azfi_s0242.g059806 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g03036 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.08G072800.1 Ceric.08G072800 component *(uL3c) of large plastid ribosomal-subunit... 0.29 OrthoFinder output from all 47 species
Cre48.g761197 No alias Protein biosynthesis.organelle translation... 0.22 OrthoFinder output from all 47 species
Dac_g08147 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g02623 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Dde_g02079 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g00510 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01019355001 No alias 50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea 0.23 OrthoFinder output from all 47 species
Gb_26251 No alias component psRPL3 of large ribosomal subunit proteome 0.16 OrthoFinder output from all 47 species
LOC_Os02g04460.1 LOC_Os02g04460 component psRPL3 of large ribosomal subunit proteome 0.29 OrthoFinder output from all 47 species
Len_g00379 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Lfl_g10299 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
MA_10432831g0010 No alias component psRPL3 of large ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Mp1g03320.1 No alias component psRPL3 of large ribosomal subunit proteome 0.34 OrthoFinder output from all 47 species
Msp_g02349 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Nbi_g00713 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Ore_g11263 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g23501 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pir_g05542 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c16_1020V3.1 Pp3c16_1020 Ribosomal protein L3 family protein 0.08 OrthoFinder output from all 47 species
Pp3c6_28830V3.1 Pp3c6_28830 Ribosomal protein L3 family protein 0.1 OrthoFinder output from all 47 species
Ppi_g07342 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015211 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Sam_g11021 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g24523 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sam_g38828 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Smo430901 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Solyc06g051200.3.1 Solyc06g051200 component psRPL3 of large ribosomal subunit proteome 0.25 OrthoFinder output from all 47 species
Spa_g05012 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.2 OrthoFinder output from all 47 species
Tin_g06461 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0045036 protein targeting to chloroplast RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
BP GO:0000304 response to singlet oxygen IEP HCCA
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000312 plastid small ribosomal subunit IEP HCCA
CC GO:0000313 organellar ribosome IEP HCCA
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006743 ubiquinone metabolic process IEP HCCA
BP GO:0006744 ubiquinone biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009409 response to cold IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009547 plastid ribosome IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0031407 oxylipin metabolic process IEP HCCA
BP GO:0031408 oxylipin biosynthetic process IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
BP GO:0032544 plastid translation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090391 granum assembly IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 150 237
No external refs found!