AT2G43460

Description : Ribosomal L38e protein family

Gene families : OG0004541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004541_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G43460

Target	Alias	Description	ECC score	Gene Family Method
Aop_g45408	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0319.g064444	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0662.g081457	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.07G049300.1	Ceric.07G049300	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.28G050900.1	Ceric.28G050900	component *(eL38) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.35G022100.1	Ceric.35G022100	component *(eL38) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.35G022200.1	Ceric.35G022200	component *(eL38) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.35G022300.1	Ceric.35G022300	component *(eL38) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021719.6	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Cre07.g325746	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Dac_g44338	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01010854001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
GSVIVT01019051001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Gb_16529	No alias	component RPL38 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Gb_29252	No alias	component RPL38 of LSU proteome component	0.12	OrthoFinder output from all 47 species
LOC_Os11g24610.1	LOC_Os11g24610	component RPL38 of LSU proteome component	0.07	OrthoFinder output from all 47 species
MA_20588g0010	No alias	component RPL38 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Pp3c10_20240V3.1	Pp3c10_20240	Ribosomal L38e protein family	0.07	OrthoFinder output from all 47 species
Pp3c12_17990V3.1	Pp3c12_17990	Ribosomal L38e protein family	0.06	OrthoFinder output from all 47 species
Pp3c4_11700V3.1	Pp3c4_11700	Ribosomal L38e protein family	0.05	OrthoFinder output from all 47 species
Smo270247	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Solyc05g055640.4.1	Solyc05g055640	component RPL38 of LSU proteome component	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	2	68

External Links

No external refs found!

AT2G43460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation