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  5. AT2G45710

AT2G45710


Description : Zinc-binding ribosomal protein family protein


Gene families : OG0001813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001813_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G45710

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00194290 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008655 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001299.2 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre12.g529400 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dac_g17983 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g35656 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01001113001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01032964001 ARS27A, RS27A Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
MA_54625g0010 ARS27A, RS27A component RPS27 of SSU proteome 0.07 OrthoFinder output from all 47 species
MA_87055g0010 ARS27A, RS27A component RPS27 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp5g09510.1 No alias component RPS27 of SSU proteome 0.04 OrthoFinder output from all 47 species
Nbi_g06002 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c1_15840V3.1 Pp3c1_15840 ribosomal protein S27 0.04 OrthoFinder output from all 47 species
Pp3c22_18310V3.1 ARS27A, RS27A,... ribosomal protein S27 0.02 OrthoFinder output from all 47 species
Pp3c2_20540V3.1 ARS27A, RS27A,... ribosomal protein S27 0.02 OrthoFinder output from all 47 species
Sam_g37791 No alias component *(eS27) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo163947 ARS27A, RS27A Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Solyc01g008080.3.1 ARS27A, RS27A,... component RPS27 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc01g008090.4.1 ARS27A, RS27A,... component RPS27 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g53353 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g57360 ARS27A, RS27A component *(eS27) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e024704_P001 ARS27A, RS27A,... component RPS27 of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR000592 Ribosomal_S27 30 84
No external refs found!