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  5. AT2G45800

AT2G45800


Description : GATA type zinc finger transcription factor family protein


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G45800
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.13 OrthoFinder output from all 47 species
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.1 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04744 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38003 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49721 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10165 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16342.t1 Aspi01Gene16342 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010765 No alias LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G035600.1 WLIM1, Ceric.14G035600 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G067600.1 WLIM1, Ceric.34G067600 LIM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g00402 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04716 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g14000 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016382001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.09 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.07 OrthoFinder output from all 47 species
LOC_Os06g13030.1 WLIM1, LOC_Os06g13030 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.12 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Len_g07886 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428887g0010 No alias transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Ore_g36153 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15172 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g094320.3.1 Solyc01g094320 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc03g114000.3.1 WLIM1, Solyc03g114000 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Solyc08g080740.3.1 Solyc08g080740 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc11g044740.2.1 WLIM1, Solyc11g044740 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.06 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0015629 actin cytoskeleton IDA Interproscan
MF GO:0051015 actin filament binding IDA Interproscan
BP GO:0051017 actin filament bundle assembly IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005451 obsolete monoatomic cation:proton antiporter activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0010959 regulation of metal ion transport IEP HCCA
MF GO:0015301 obsolete anion:anion antiporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0043266 regulation of potassium ion transport IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
BP GO:1901016 regulation of potassium ion transmembrane transporter activity IEP HCCA
BP GO:1901379 regulation of potassium ion transmembrane transport IEP HCCA
BP GO:1901979 regulation of inward rectifier potassium channel activity IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
BP GO:2001257 regulation of cation channel activity IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 106 161
IPR001781 Znf_LIM 10 65
No external refs found!