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  5. AT2G47780

AT2G47780


Description : Rubber elongation factor protein (REF)


Gene families : OG0001058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G47780
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Ala_g19570 No alias lipid droplet-associated factor *(LDAP) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035721 No alias lipid droplet-associated factor *(LDAP) & original... 0.04 OrthoFinder output from all 47 species
Cba_g10484 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Cba_g35119 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Ceric.17G068200.1 Ceric.17G068200 lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g16885 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
MA_13880g0010 STP7 associated factor (LDAP) 0.02 OrthoFinder output from all 47 species
Mp4g15940.1 No alias associated factor (LDAP) 0.02 OrthoFinder output from all 47 species
Nbi_g04075 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g11202 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g41441 No alias lipid droplet-associated factor *(LDAP) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e027499_P002 Zm00001e027499 associated factor (LDAP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009062 fatty acid catabolic process RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004451 isocitrate lyase activity IEP HCCA
MF GO:0004474 malate synthase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
BP GO:0006649 phospholipid transfer to membrane IEP HCCA
BP GO:0012501 programmed cell death IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0080167 response to karrikin IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR008802 REF 36 228
No external refs found!