AT3G02210 (COBL1)

Aliases : COBL1

Description : COBRA-like protein 1 precursor

Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02210

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00111550	SEB1, COBL7,...	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.04	OrthoFinder output from all 47 species
Adi_g021949	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Aop_g01726	COBL2	regulatory protein *(COB) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Aop_g11523	SEB1, COBL7, ATSEB1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Dcu_g40673	COBL2	regulatory protein *(COB) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Gb_36719	IRX6, COBL4	COB cellulose microfibrils and hemicellulose interaction protein	0.02	OrthoFinder output from all 47 species
LOC_Os03g54750.1	COB, LOC_Os03g54750	COB cellulose microfibrils and hemicellulose interaction protein	0.03	OrthoFinder output from all 47 species
MA_10431440g0020	COBL1	COB cellulose microfibrils and hemicellulose interaction protein	0.02	OrthoFinder output from all 47 species
Mp1g18890.1	COBL10	COB cellulose microfibrils and hemicellulose interaction protein	0.02	OrthoFinder output from all 47 species
Ore_g28453	COB	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Pp3c4_14561V3.1	Pp3c4_14561	No annotation	0.01	OrthoFinder output from all 47 species
Ppi_g03011	COBL1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Solyc01g065530.3.1	SEB1, COBL7,...	COB cellulose microfibrils and hemicellulose interaction protein	0.03	OrthoFinder output from all 47 species
Spa_g24271	COBL1	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Tin_g29852	COBL2	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Zm00001e001386_P001	SEB1, COBL7,...	COB cellulose microfibrils and hemicellulose interaction protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009944	polarity specification of adaxial/abaxial axis	RCA	Interproscan
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016570	histone modification	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048449	floral organ formation	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000354	cis assembly of pre-catalytic spliceosome	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
CC	GO:0005686	U2 snRNP	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0010262	somatic embryogenesis	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
BP	GO:0031099	regeneration	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006918	COBRA_pln	57	220

External Links

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AT3G02210 (COBL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation