AT3G02550 (LBD41)

Aliases : LBD41

Description : LOB domain-containing protein 41

Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02550
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
Adi_g082772	LBD37, ASL39	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07731	LBD38	AS2/LOB-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01008284001	LBD40	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.07	OrthoFinder output from all 47 species
GSVIVT01031035001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.16	OrthoFinder output from all 47 species
Gb_36942	LBD40	transcription factor (AS2/LOB)	0.09	OrthoFinder output from all 47 species
Gb_36943	LBD40	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
LOC_Os01g32770.1	LBD41, LOC_Os01g32770	transcription factor (AS2/LOB)	0.05	OrthoFinder output from all 47 species
Lfl_g17424	LBD38	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_3661g0010	LBD40	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
MA_63523g0010	LBD38	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
Pir_g28151	LBD38	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g07374	No alias	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g119530.3.1	LBD41, Solyc03g119530	transcription factor (AS2/LOB)	0.09	OrthoFinder output from all 47 species
Zm00001e027415_P001	LBD41, Zm00001e027415	transcription factor (AS2/LOB)	0.1	OrthoFinder output from all 47 species
Zm00001e027417_P001	LBD41, Zm00001e027417	transcription factor (AS2/LOB)	0.09	OrthoFinder output from all 47 species
Zm00001e032150_P001	LBD41, Zm00001e032150	transcription factor (AS2/LOB)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004457	lactate dehydrogenase activity	IEP	HCCA
MF	GO:0004737	pyruvate decarboxylase activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004883	LOB	4	103

External Links

No external refs found!

AT3G02550 (LBD41)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation