AT3G03220 (ATEXP13, ATEXPA13,...)

Aliases : ATEXP13, ATEXPA13, ATHEXP ALPHA 1.22, EXPA13, EXP13

Description : expansin A13

Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G03220

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00240270	ATEXPL2, EXPL2,...	Cell wall.cell wall proteins.expansins.alpha-like-type expansin	0.03	OrthoFinder output from all 47 species
AT3G15370	ATHEXP ALPHA...	expansin 12	0.03	OrthoFinder output from all 47 species
AT5G39290	ATEXP26, ATHEXP...	expansin A26	0.04	OrthoFinder output from all 47 species
Adi_g007240	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21493	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g20858	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Als_g02221	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g00307	EXPB3, ATEXPB3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05834	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g20677	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14225.t1	ATEXPA4, ATEXP4,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52606.t1	EXPB3, ATEXPB3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g10427	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G000300.1	ATEXPA10,...	alpha-class expansin & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.11G026000.1	ATEXPA10,...	alpha-class expansin & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g15384	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g01270.1	ATHEXP BETA 1.4,...	Expansin-B7 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os03g06010.1	ATEXPA11, ATHEXP...	alpha-class expansin	0.02	OrthoFinder output from all 47 species
LOC_Os04g44780.1	EXPB3, ATEXPB3,...	Expansin-B17 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os06g41700.1	ATEXPA20,...	alpha-class expansin	0.03	OrthoFinder output from all 47 species
Len_g20899	ATEXPA1, EXP1,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Len_g59336	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Mp8g18860.1	ATEXPA4, ATEXP4,...	alpha-class expansin	0.02	OrthoFinder output from all 47 species
Msp_g28211	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g31390	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g05268	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07847	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g20451	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g20453	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25427	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g33848	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g34219	ATEXPA3, EXP3,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43051	ATEXPA1, EXP1,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g59568	ATEXPA4, ATEXP4,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g01997	EXP15, ATEXPA15,...	alpha-class expansin & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011304	EXPA8, ATHEXP...	alpha-class expansin & original description: CDS=181-945	0.03	OrthoFinder output from all 47 species
Smo174522	ATEXPA10,...	Cell wall.cell wall proteins.expansins.alpha-type expansin	0.02	OrthoFinder output from all 47 species
Spa_g10234	ATEXPA10,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12972	EXPB3, ATEXPB3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g25448	ATEXPA3, EXP3,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49386	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g03825	ATEXPA4, ATEXP4,...	alpha-class expansin & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g05844	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14482	ATEXPA10,...	alpha-class expansin & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000038_P001	ATHEXP BETA 1.4,...	Expansin-B7 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Zm00001e007438_P001	EXPB3, ATEXPB3,...	beta-class expansin	0.03	OrthoFinder output from all 47 species
Zm00001e011741_P001	ATEXPA4, ATEXP4,...	alpha-class expansin	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009009	RlpA-like_DPBB	76	161
IPR007117	Expansin_CBD	172	249

External Links

No external refs found!

AT3G03220 (ATEXP13, ATEXPA13,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation