AT3G04450

Description : Homeodomain-like superfamily protein

Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04450
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
Aev_g08018	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g13279	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g03610	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aob_g13779	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g43661	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g36463	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g05828	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g08284	KAN4, ATS	KANADI-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g39292	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01033515001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
Gb_17966	No alias	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
Gb_20217	No alias	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
Pir_g12454	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005961	KAN3	not classified & original description: CDS=52-843	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010896	No alias	transcription factor *(CLAUSA) & original description: CDS=80-784	0.03	OrthoFinder output from all 47 species
Smo423505	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	OrthoFinder output from all 47 species
Solyc04g079600.3.1	KAN4, ATS, Solyc04g079600	G2-like GARP transcription factor	0.01	OrthoFinder output from all 47 species
Solyc09g072830.4.1	PHL1, Solyc09g072830	PHR1 transcription factor involved in proline synthesis...	0.03	OrthoFinder output from all 47 species
Solyc09g091880.4.1	Solyc09g091880	G2-like GARP transcription factor. transcription factor (PHR1)	0.02	OrthoFinder output from all 47 species
Solyc10g076460.2.1	Solyc10g076460	G2-like GARP transcription factor	0.04	OrthoFinder output from all 47 species
Solyc10g083340.3.1	Solyc10g083340	G2-like GARP transcription factor	0.04	OrthoFinder output from all 47 species
Tin_g01742	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e014339_P001	Zm00001e014339	Putative Myb family transcription factor At1g14600...	0.01	OrthoFinder output from all 47 species
Zm00001e035893_P001	Zm00001e035893	G2-like GARP transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004551	dinucleotide phosphatase activity	IEP	HCCA
MF	GO:0004856	xylulokinase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
MF	GO:0047884	FAD diphosphatase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	240	291
IPR025756	Myb_CC_LHEQLE	326	373

External Links

No external refs found!

AT3G04450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation