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  5. AT3G04510

AT3G04510 (LSH2)


Aliases : LSH2

Description : Protein of unknown function (DUF640)


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G04510
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 LSH6,... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Adi_g018931 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g024284 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g04816 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Als_g17249 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g21143 LSH6 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene25077.t1 LSH4, Aspi01Gene25077 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010927 LSH1 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043036 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0639.g080525 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G090800.1 LSH6, Ceric.14G090800 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.18G075200.1 LSH4, Ceric.18G075200 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G008000.1 LSH4, Ceric.29G008000 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g11583 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01020708001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 OrthoFinder output from all 47 species
GSVIVT01021215001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 OrthoFinder output from all 47 species
GSVIVT01024677001 LSH6 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.04 OrthoFinder output from all 47 species
GSVIVT01027827001 LSH10 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01028348001 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 OrthoFinder output from all 47 species
Gb_15426 LSH4 Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Gb_36840 LSH4 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
LOC_Os02g41460.1 LSH4, LOC_Os02g41460 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g56610.1 LSH4, LOC_Os02g56610 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
LOC_Os06g46030.1 LSH4, LOC_Os06g46030 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
LOC_Os07g04670.1 LSH6, LOC_Os07g04670 Protein G1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Len_g03152 LSH6 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Len_g03807 LSH1 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Mp2g00330.1 LSH4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
Msp_g05594 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g02008 LSH4 plant-specific ALOG-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ppi_g32132 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000386 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069510.1.1 LSH4, Solyc02g069510 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.06 OrthoFinder output from all 47 species
Solyc05g055020.4.1 LSH1, Solyc05g055020 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.03 OrthoFinder output from all 47 species
Solyc09g025280.1.1 LSH4, Solyc09g025280 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.11 OrthoFinder output from all 47 species
Solyc09g090180.1.1 LSH4, Solyc09g090180 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 OrthoFinder output from all 47 species
Solyc10g007310.1.1 LSH10, Solyc10g007310 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 OrthoFinder output from all 47 species
Solyc10g008000.1.1 LSH10, Solyc10g008000 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 OrthoFinder output from all 47 species
Spa_g04648 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g22798 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g28138 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g06794 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004570_P001 LSH4, Zm00001e004570 Protein G1-like4 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 OrthoFinder output from all 47 species
Zm00001e013711_P001 LSH4, Zm00001e013711 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
Zm00001e016177_P002 LSH4, Zm00001e016177 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.07 OrthoFinder output from all 47 species
Zm00001e023639_P001 LSH4, Zm00001e023639 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.1 OrthoFinder output from all 47 species
Zm00001e027222_P001 LSH6, Zm00001e027222 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 OrthoFinder output from all 47 species
Zm00001e028824_P001 LSH6, Zm00001e028824 Protein G1-like8 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e030343_P002 LSH4, Zm00001e030343 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e032784_P001 LSH6, Zm00001e032784 Protein G1 OS=Oryza sativa subsp. japonica... 0.11 OrthoFinder output from all 47 species
Zm00001e037775_P001 LSH4, Zm00001e037775 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000060 obsolete protein import into nucleus, translocation IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010022 meristem determinacy IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010220 positive regulation of vernalization response IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010254 nectary development IEP HCCA
BP GO:0010338 leaf formation IEP HCCA
BP GO:0010434 bract formation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0040009 regulation of growth rate IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046622 positive regulation of organ growth IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048506 regulation of timing of meristematic phase transition IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048639 positive regulation of developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 23 146
No external refs found!