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  5. AT3G05560

AT3G05560


Description : Ribosomal L22e protein family


Gene families : OG0000996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G05560

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00189250 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Adi_g012188 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g012189 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g062074 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g077282 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g103620 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124335 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aev_g03619 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g11886 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ala_g18322 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Als_g03478 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g19592 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g24279 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g38432 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g38436 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aob_g00408 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aob_g15050 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g10541 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.23 OrthoFinder output from all 47 species
Aop_g22540 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aop_g22620 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g24260 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g51812 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38161.t1 Aspi01Gene38161 component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene72593.t1 Aspi01Gene72593 component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007793 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Azfi_s0005.g009357 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cba_g21293 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g49596 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.08G045600.1 Ceric.08G045600 component *(eL22) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Ceric.26G014800.1 Ceric.26G014800 component *(eL22) of large ribosomal-subunit (LSU)... 0.22 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.7 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Cre07.g357850 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 OrthoFinder output from all 47 species
Dac_g04863 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Dac_g14500 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dac_g27123 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g18517 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g27968 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g03143 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01028021001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder output from all 47 species
GSVIVT01031130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.36 OrthoFinder output from all 47 species
GSVIVT01031158001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 OrthoFinder output from all 47 species
GSVIVT01035141001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 OrthoFinder output from all 47 species
Gb_08874 No alias component RPL22 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Gb_36164 No alias component RPL22 of LSU proteome component 0.25 OrthoFinder output from all 47 species
LOC_Os03g22340.1 LOC_Os03g22340 component RPL22 of LSU proteome component 0.4 OrthoFinder output from all 47 species
LOC_Os07g47710.1 LOC_Os07g47710 component RPL22 of LSU proteome component 0.31 OrthoFinder output from all 47 species
Len_g02014 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Len_g02481 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g31513 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_130453g0010 No alias component RPL22 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Mp4g02920.1 No alias component RPL22 of LSU proteome component 0.51 OrthoFinder output from all 47 species
Msp_g03306 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.27 OrthoFinder output from all 47 species
Msp_g20028 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g03911 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g40025 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Pp3c11_630V3.1 Pp3c11_630 Ribosomal L22e protein family 0.16 OrthoFinder output from all 47 species
Pp3c16_17710V3.1 Pp3c16_17710 Ribosomal L22e protein family 0.02 OrthoFinder output from all 47 species
Pp3c1_120V3.1 Pp3c1_120 Ribosomal L22e protein family 0.22 OrthoFinder output from all 47 species
Pp3c2_28500V3.1 Pp3c2_28500 Ribosomal L22e protein family 0.29 OrthoFinder output from all 47 species
Pp3c2_28510V3.1 Pp3c2_28510 Ribosomal L22e protein family 0.29 OrthoFinder output from all 47 species
Pp3c7_27030V3.1 Pp3c7_27030 Ribosomal L22e protein family 0.09 OrthoFinder output from all 47 species
Ppi_g23306 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g23657 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g24808 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ppi_g33837 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g38125 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025519 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g13723 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g13724 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g30822 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g32149 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g32393 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g41282 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g46506 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g46507 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g47525 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Smo270704 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Solyc01g099830.3.1 Solyc01g099830 component RPL22 of LSU proteome component 0.43 OrthoFinder output from all 47 species
Solyc09g075150.3.1 Solyc09g075150 component RPL22 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Solyc09g075155.1.1 Solyc09g075155 component RPL22 of LSU proteome component 0.29 OrthoFinder output from all 47 species
Spa_g05462 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g14668 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g22846 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g25050 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g33994 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g42689 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g36488 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.25 OrthoFinder output from all 47 species
Zm00001e010958_P001 Zm00001e010958 component RPL22 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Zm00001e035835_P001 Zm00001e035835 component RPL22 of LSU proteome component 0.35 OrthoFinder output from all 47 species
Zm00001e038221_P001 Zm00001e038221 component RPL22 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005773 vacuole IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048513 animal organ development IEP HCCA
BP GO:0048569 post-embryonic animal organ development IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 14 122
No external refs found!