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  5. Pnu_g30093

Pnu_g30093 (OTP84)


Aliases : OTP84

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g30093
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT1G31430 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g008519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18190 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33780 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30201 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55329 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57094 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.02 OrthoFinder output from all 47 species
Azfi_s0024.g020314 OTP84 not classified & original description: CDS=1-1800 0.03 OrthoFinder output from all 47 species
Azfi_s0229.g059115 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0283.g063049 OTP86 ssDNA-binding protein *(OSB) & original description: CDS=1-2283 0.03 OrthoFinder output from all 47 species
Azfi_s0312.g064188 No alias not classified & original description: CDS=1-2817 0.03 OrthoFinder output from all 47 species
Cba_g05246 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.02 OrthoFinder output from all 47 species
Ceric.29G081200.1 OTP86, Ceric.29G081200 not classified & original description: pacid=50624479... 0.03 OrthoFinder output from all 47 species
Ceric.35G064900.1 Ceric.35G064900 not classified & original description: pacid=50581299... 0.03 OrthoFinder output from all 47 species
Dac_g36894 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06431 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g37149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45852 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47925 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21750 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os06g48660.1 LOC_Os06g48660 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Len_g17570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21362 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43456 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g43898 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436932g0010 No alias ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g20568 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41402 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38645 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20007 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13547 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03155 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04505 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23560 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30070 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30309 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30641 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007869 No alias not classified & original description: CDS=1-2253 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0186.g025088 No alias not classified & original description: CDS=1-2760 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026691 No alias not classified & original description: CDS=1-2898 0.03 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g048900.1.1 Solyc06g048900 Pentatricopeptide repeat-containing protein At2g40720... 0.03 OrthoFinder output from all 47 species
Solyc07g008890.3.1 Solyc07g008890 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019971_P001 Zm00001e019971 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004347 glucose-6-phosphate isomerase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 240 302
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 21 69
IPR032867 DYW_dom 338 373
IPR002885 Pentatricopeptide_repeat 97 120
No external refs found!