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  5. AT3G06330

AT3G06330


Description : RING/U-box superfamily protein


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06330

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253970 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT5G01070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.05 OrthoFinder output from all 47 species
Als_g33017 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0222.g058783 No alias E3 ubiquitin ligase & original description: CDS=360-1118 0.02 OrthoFinder output from all 47 species
Azfi_s0293.g063480 No alias E3 ubiquitin ligase & original description: CDS=497-1888 0.04 OrthoFinder output from all 47 species
Ceric.15G009300.1 Ceric.15G009300 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Dde_g19756 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08355 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10273 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017826001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Gb_16779 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g46366.1 LOC_Os06g46366 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g05831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26464 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08769 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Smo163014 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Solyc03g006060.3.1 Solyc03g006060 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g42112 No alias E3 ubiquiTin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e014864_P002 Zm00001e014864 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 218 264
No external refs found!