AT3G07340

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07340

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
AT1G10120	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G18400	BEE1	BR enhanced expression 1	0.03	OrthoFinder output from all 47 species
AT1G73830	BEE3	BR enhanced expression 3	0.04	OrthoFinder output from all 47 species
AT2G46970	PIL1	phytochrome interacting factor 3-like 1	0.02	OrthoFinder output from all 47 species
AT3G21330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G57800	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	OrthoFinder output from all 47 species
AT4G34530	CIB1	cryptochrome-interacting basic-helix-loop-helix 1	0.03	OrthoFinder output from all 47 species
Adi_g079197	ATRSL1, RSL1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g088431	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aev_g08203	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aev_g10642	LRL1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g17229	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aev_g19667	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28350	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g10601	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g20444	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ala_g33936	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30860	LRL3	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g30603	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g38923	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene03952.t1	Aspi01Gene03952	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene12606.t2	Aspi01Gene12606	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene37755.t1	Aspi01Gene37755	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene60934.t1	PIF3, POC1,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g68995	LRL3	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.03G025300.1	RHD6, Ceric.03G025300	bHLH-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.10G063500.1	PIF3, POC1,...	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.17G001900.1	CIB1, Ceric.17G001900	regulatory protein (CIB) of blue light perception &...	0.08	OrthoFinder output from all 47 species
Ceric.20G088200.1	RHD6, Ceric.20G088200	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.28G002800.1	Ceric.28G002800	regulatory protein (CIB) of blue light perception &...	0.05	OrthoFinder output from all 47 species
Ceric.32G068300.1	Ceric.32G068300	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g07379	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26546	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
GSVIVT01009479001	HEC1	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
Gb_06182	No alias	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os01g67480.1	LOC_Os01g67480	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Len_g10068	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Len_g35329	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Mpzg01410.1	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g43243	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g06737	SPT	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g11634	SPT	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g16755	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g25662	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Ore_g42592	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g07604	No alias	regulatory protein (CIB) of blue light perception &...	0.05	OrthoFinder output from all 47 species
Pir_g39906	PIL1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g39212	RHD6	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g20059	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Sam_g51492	No alias	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Smo402301	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Solyc02g091440.2.1	RHD6, Solyc02g091440	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc05g006650.3.1	Solyc05g006650	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Solyc12g098620.2.1	Solyc12g098620	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Spa_g06107	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e003701_P003	Zm00001e003701	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e011084_P002	Zm00001e011084	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Zm00001e018857_P002	Zm00001e018857	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e034605_P003	Zm00001e034605	transcription factor (bHLH). transcriptional regulator (CIB)	0.06	OrthoFinder output from all 47 species
Zm00001e035219_P001	Zm00001e035219	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e036318_P001	LRL1, Zm00001e036318	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
MF	GO:0048040	UDP-glucuronate decarboxylase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	268	315

External Links

No external refs found!

AT3G07340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation