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  5. AT3G07590

AT3G07590


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G07590
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127560 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
AT4G02840 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
Adi_g009378 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Adi_g077290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Als_g04085 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Aob_g06290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Aop_g20682 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Ceric.38G033800.1 Ceric.38G033800 component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.23 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cre16.g665400 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Dcu_g10626 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
GSVIVT01014776001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Lfl_g36844 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
MA_96784g0010 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Mp1g03900.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species
Msp_g40348 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Solyc06g084310.4.1 Solyc06g084310 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.1 OrthoFinder output from all 47 species
Tin_g02947 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Tin_g23233 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Zm00001e022838_P001 Zm00001e022838 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.09 OrthoFinder output from all 47 species
Zm00001e041053_P001 Zm00001e041053 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006626 protein targeting to mitochondrion RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005773 vacuole IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!