AT3G09760

Description : RING/U-box superfamily protein

Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09760

Target	Alias	Description	ECC score	Gene Family Method
AT2G37950	No alias	RING/FYVE/PHD zinc finger superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g024407	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g13796	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0059.g034655	No alias	not classified & original description: CDS=1081-1965	0.03	OrthoFinder output from all 47 species
Cba_g68167	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11528	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01025179001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
Len_g27849	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
MA_10436661g0020	No alias	RING-v-class E3 ligase	0.03	OrthoFinder output from all 47 species
Nbi_g03458	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14219	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g15359	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g11481	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009961	No alias	E3 ubiquitin ligase & original description: CDS=391-1818	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018968	No alias	bHLH-type transcription factor & original description: CDS=1-675	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006625	protein targeting to peroxisome	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015919	peroxisomal membrane transport	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016558	protein import into peroxisome matrix	RCA	Interproscan
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043574	peroxisomal transport	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044743	protein transmembrane import into intracellular organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072662	protein localization to peroxisome	None	Extended
BP	GO:0072663	establishment of protein localization to peroxisome	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	266	313

External Links

No external refs found!

AT3G09760

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation