AT3G09840 (CDC48A, CDC48, ATCDC48)

Aliases : CDC48A, CDC48, ATCDC48

Description : cell division cycle 48

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09840
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
Adi_g000420	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g080379	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g38164	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.10	No alias	Cell division control protein 48 homolog D...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.11	CDC48A, CDC48, ATCDC48	Cell division control protein 48 homolog A...	0.02	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Gb_24470	No alias	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Pnu_g10495	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g53020	emb1354, CDC48C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g074980.3.1	Solyc06g074980	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Spa_g22537	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g41958	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005635	nuclear envelope	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005819	spindle	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009524	phragmoplast	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009846	pollen germination	IMP	Interproscan
BP	GO:0009860	pollen tube growth	IMP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016310	phosphorylation	IDA	Interproscan
BP	GO:0016310	phosphorylation	RCA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISS	Interproscan
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
MF	GO:0042802	identical protein binding	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051301	cell division	IMP	Interproscan
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0070085	glycosylation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010078	maintenance of root meristem identity	IEP	HCCA
MF	GO:0010178	IAA-amino acid conjugate hydrolase activity	IEP	HCCA
MF	GO:0010179	IAA-Ala conjugate hydrolase activity	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
BP	GO:0016032	viral process	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
MF	GO:0031176	endo-1,4-beta-xylanase activity	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0044000	movement in host	IEP	HCCA
BP	GO:0044001	migration in host	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0046739	transport of virus in multicellular host	IEP	HCCA
BP	GO:0046740	transport of virus in host, cell to cell	IEP	HCCA
BP	GO:0046794	transport of virus	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0051701	biological process involved in interaction with host	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
MF	GO:0097599	xylanase activity	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004201	Cdc48_dom2	131	194
IPR003959	ATPase_AAA_core	244	373
IPR003959	ATPase_AAA_core	517	651
IPR003338	CDC4_N-term_subdom	29	110

External Links

No external refs found!

AT3G09840 (CDC48A, CDC48, ATCDC48)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation