AT3G10610

Description : Ribosomal S17 family protein

Gene families : OG0001873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001873_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10610

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00081410	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00243530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder output from all 47 species
AT2G04390	No alias	Ribosomal S17 family protein	0.09	OrthoFinder output from all 47 species
Adi_g017904	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Adi_g041928	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ala_g00332	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g19425	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Als_g00421	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aob_g06294	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g12251	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Aop_g30259	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.29	OrthoFinder output from all 47 species
Aop_g31689	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Azfi_s0144.g051553	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Cba_g01433	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.34G043500.1	Ceric.34G043500	component *(eS17) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Cre12.g498250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	OrthoFinder output from all 47 species
Dac_g03550	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Dac_g26225	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g08562	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g21263	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g28501	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Dde_g17744	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g08830	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01033920001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01034653001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Gb_20256	No alias	component RPS17 of SSU proteome	0.23	OrthoFinder output from all 47 species
LOC_Os03g01900.1	LOC_Os03g01900	component RPS17 of SSU proteome	0.11	OrthoFinder output from all 47 species
LOC_Os10g27190.1	LOC_Os10g27190	component RPS17 of SSU proteome	0.11	OrthoFinder output from all 47 species
Len_g33956	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g58133	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Lfl_g28410	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_184894g0010	No alias	component RPS17 of SSU proteome	0.35	OrthoFinder output from all 47 species
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.34	OrthoFinder output from all 47 species
Msp_g19559	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Msp_g43078	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Nbi_g00393	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g03551	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g57667	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_2540V3.1	Pp3c11_2540	Ribosomal S17 family protein	0.21	OrthoFinder output from all 47 species
Pp3c2_34780V3.1	Pp3c2_34780	Ribosomal S17 family protein	0.13	OrthoFinder output from all 47 species
Pp3c7_21070V3.1	Pp3c7_21070	Ribosomal S17 family protein	0.07	OrthoFinder output from all 47 species
Pp3c7_21140V3.1	Pp3c7_21140	Ribosomal S17 family protein	0.23	OrthoFinder output from all 47 species
Ppi_g10134	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g11751	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ppi_g23609	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g57893	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004150	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Sam_g12734	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Sam_g18552	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g41456	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo270936	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
Solyc05g055230.2.1	Solyc05g055230	component RPS17 of SSU proteome	0.38	OrthoFinder output from all 47 species
Solyc10g150146.1.1	Solyc10g150146	component RPS17 of SSU proteome	0.37	OrthoFinder output from all 47 species
Solyc11g006690.1.1	Solyc11g006690	component RPS17 of SSU proteome	0.22	OrthoFinder output from all 47 species
Spa_g10597	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.22	OrthoFinder output from all 47 species
Spa_g42892	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Spa_g44094	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Tin_g00206	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Zm00001e030769_P001	Zm00001e030769	component RPS17 of SSU proteome	0.15	OrthoFinder output from all 47 species
Zm00001e036233_P001	Zm00001e036233	component RPS17 of SSU proteome	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IBA	Interproscan
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006414	translational elongation	IBA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	120

External Links

No external refs found!

AT3G10610

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation