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  5. AT3G11460

AT3G11460


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G11460

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Adi_g034338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g128510 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42313 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16335 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010527 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.04 OrthoFinder output from all 47 species
Azfi_s0084.g039082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s0120.g046799 No alias not classified & original description: CDS=1-2385 0.03 OrthoFinder output from all 47 species
Cba_g06597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20834 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g24367 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g44516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67804 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75109 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.04G103400.1 Ceric.04G103400 not classified & original description: pacid=50630509... 0.03 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.02 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.04 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.03 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g05153 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40077 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g41810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45843 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21994 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30703 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_23967 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
Gb_31034 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Len_g04342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08566 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21957 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07372 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08720 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10692 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Msp_g28215 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05446 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04075 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01983 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41973 OSB4 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Pir_g51106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16492 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22056 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002726 No alias not classified & original description: CDS=1-1413 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007046 No alias not classified & original description: CDS=1-2853 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007750 No alias not classified & original description: CDS=1-1920 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007869 No alias not classified & original description: CDS=1-2253 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010465 No alias not classified & original description: CDS=1-2262 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021137 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-933 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.03 OrthoFinder output from all 47 species
Sam_g07455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo83034 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24933 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g24970 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0016554 cytidine to uridine editing IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 396 421
IPR002885 Pentatricopeptide_repeat 299 320
IPR002885 Pentatricopeptide_repeat 91 113
IPR002885 Pentatricopeptide_repeat 222 268
IPR002885 Pentatricopeptide_repeat 121 159
IPR002885 Pentatricopeptide_repeat 322 369
IPR032867 DYW_dom 495 613
No external refs found!