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  5. AT3G12870

AT3G12870


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0000313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12870
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00158580 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AMTR_s00147p00098270 evm_27.TU.AmTr_v1... No description available 0.14 OrthoFinder output from all 47 species
Als_g46613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47707.t1 Aspi01Gene47707 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07849 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12879 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os03g56700.1 LOC_Os03g56700 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g38760.1 LOC_Os08g38760 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os08g38790.1 LOC_Os08g38790 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Len_g17488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426247g0010 No alias no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
MA_457405g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Msp_g21149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003361 No alias not classified & original description: CDS=1-510 0.04 OrthoFinder output from all 47 species
Solyc07g066040.1.1 Solyc07g066040 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc07g066540.1.1 Solyc07g066540 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Zm00001e003437_P001 Zm00001e003437 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e005688_P001 Zm00001e005688 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e011930_P001 Zm00001e011930 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009957 epidermal cell fate specification IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016048 detection of temperature stimulus IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
CC GO:0046658 obsolete anchored component of plasma membrane IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0051753 mannan synthase activity IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!